Phylogenetics podcast

Phylogenetics

Phylogenetics is the reconstruction and analysis of trees and networks to describe and understand the evolution of species, populations and individuals. It is widely used in molecular biology and other areas of classification (such as linguistics), and has both led to and benefited from the development of new mathematical, statistical and computational techniques. Although the foundations of phylogenetics were laid down many decades ago, it is currently experiencing an exciting renaissance due to the wealth and types of biological data that are now becoming available. This programme will bring together key researchers in phylogenetics and related areas to further develop this important area of mathematical biology. The main themes that will be worked on during this programme are new data types in phylogenetics; modelling reticulate evolution; constructing large trees; probabilistic models of evolution; and phylogenetic combinatorics. These themes provide a rich source of mathematical problems in areas such as combinatorics, graph theory, probability theory, topology, and algebraic geometry. Solutions to these problems will provide new insights to questions that are central to contemporary evolutionary biology. EVENTS: - Spitalfields Day - Yggdrasil: Reconstructing the Tree of Life http://www.newton.ac.uk/programmes/PLG/PLG_Spitalfields.html - Current Challenges and Problems in Phylogenetics http://www.newton.ac.uk/programmes/PLG/plgw01.html - Future Directions in Phylogenetic Methods and Models http://www.newton.ac.uk/programmes/PLG/plgw03.html - Phylogenetics: New data, new Phylogenetic challenges http://www.newton.ac.uk/programmes/PLG/plgw05.html

Phylogenetics is the reconstruction and analysis of trees and networks to describe and understand the evolution of species, populations and individuals. It is widely used in molecular biology and other areas of classification (such as linguistics), and has both led to and benefited from the development of new mathematical, statistical and computational techniques. Although the foundations of phylogenetics were laid down many decades ago, it is currently experiencing an exciting renaissance due to the wealth and types of biological data that are now becoming available. This programme will bring together key researchers in phylogenetics and related areas to further develop this important area of mathematical biology. The main themes that will be worked on during this programme are new data types in phylogenetics; modelling reticulate evolution; constructing large trees; probabilistic models of evolution; and phylogenetic combinatorics. These themes provide a rich source of mathematical problems in areas such as combinatorics, graph theory, probability theory, topology, and algebraic geometry. Solutions to these problems will provide new insights to questions that are central to contemporary evolutionary biology. EVENTS: - Spitalfields Day - Yggdrasil: Reconstructing the Tree of Life http://www.newton.ac.uk/programmes/PLG/PLG_Spitalfields.html - Current Challenges and Problems in Phylogenetics http://www.newton.ac.uk/programmes/PLG/plgw01.html - Future Directions in Phylogenetic Methods and Models http://www.newton.ac.uk/programmes/PLG/plgw03.html - Phylogenetics: New data, new Phylogenetic challenges http://www.newton.ac.uk/programmes/PLG/plgw05.html

 

#126

Estimating ultra-large phylogenies and alignments

Warnow, T (University of Texas at Austin) Friday 24 June 2011, 11:30-12:30

28 Jun 2011

56 MINS

56:13

28 Jun 2011


#125

The combinatorics of distance-based tree inference

Pardi, F (CNRS) Friday 24 June 2011, 10:40-11:00

28 Jun 2011

17 MINS

17:50

28 Jun 2011


#124

Assessing the limits of phylogenomics: can too much data be a bad thing?

Bininda-Emonds, O (Carl von Ossietzky Universität Oldenburg) Friday 24 June 2011, 09:... more

27 Jun 2011

1 HR 04 MINS

1:04:29

27 Jun 2011


#123

Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions

Doerr, D (Bielefeld ) Friday 24 June 2011, 10:20-10:40

27 Jun 2011

20 MINS

20:34

27 Jun 2011


#122

Integrative analysis if environmental sequences

Huson, D (University of Tubingen) Thursday 23 June 2011, 14:00-15:00

27 Jun 2011

1 HR 00 MINS

1:00:47

27 Jun 2011


#121

Mammalian phylogeny reveals recent diversi cation rate shifts

Stadler, T (ETH Zürich) Thursday 23 June 2011, 12:10-12:30

27 Jun 2011

25 MINS

25:01

27 Jun 2011


#120

A generalization of Stirling numbers and distribution of phylogenetic trees

Czabarka, E (South Carolina) Thursday 23 June 2011, 11:50-12:10

27 Jun 2011

17 MINS

17:17

27 Jun 2011


#119

A Lie algebraic classification of continuous-time Markov models

Sumner, J (Tasmania) Thursday 23 June 2011, 11:30-11:50

27 Jun 2011

22 MINS

22:34

27 Jun 2011


#118

Tree reconciliations: beyond the LCA mapping

Wu, T (National University of Singapore) Thursday 23 June 2011, 10:40-11:00

27 Jun 2011

19 MINS

19:06

27 Jun 2011


#117

Coalescent-based Species Tree Inference from Gene Tree Topologies Under Incomplete Lineage Sorting b...

Wu, Y (Connecticut) Thursday 23 June 2011, 10:20-10:40

27 Jun 2011

17 MINS

17:54

27 Jun 2011


#116

Speciation & Extinction Rate Estimation from Phylogenetic Trees

Hordijk, W (Lausanne) Thursday 23 June 2011, 10:00-10:20

27 Jun 2011

22 MINS

22:15

27 Jun 2011


#115

Trees as representations of evolutionary information worth keeping

Mooers, A (Simon Fraser University) Thursday 23 June 2011, 09:00-10:00

27 Jun 2011

59 MINS

59:54

27 Jun 2011


#114

Are there alternatives to handling site-to-site rate variation in evolutionary characters

McInerney, JO (National University of Ireland) Wednesday 22 June 2011, 16:00-17:00

27 Jun 2011

1 HR 06 MINS

1:06:53

27 Jun 2011


#113

An empirical study of the effect of sequence alignment on phylogenetic analysis

Blackburne, B (Manchester) Wednesday 22 June 2011, 15:00-15:20

27 Jun 2011

20 MINS

20:41

27 Jun 2011


#112

Modelling protein evolution

Gascuel, O (CNRS) Wednesday 22 June 2011, 14:00-15:00

27 Jun 2011

57 MINS

57:39

27 Jun 2011


#111

Sequence Classification using Reference Taxonomies

Valiente, G (Technical University of Catalonia) Wednesday 22 June 2011, 11:30-12:30

24 Jun 2011

1 HR 03 MINS

1:03:44

24 Jun 2011


#110

Evaluating the goodness of fit between a phylogenetic model and an alignment

von Haeseler, A (MFPL, Vienna) Wednesday 22 June 2011, 09:00-10:00

24 Jun 2011

57 MINS

57:49

24 Jun 2011


#109

Phylodynamic inference - accounting for the interaction of evolutionary and ecological processes

Kühnert, D (Auckland) Wednesday 22 June 2011, 10:40-11:00

24 Jun 2011

15 MINS

15:40

24 Jun 2011


#108

Genome sequencing of Leishmania donovani clinical lines reveals dynamic phylogenetic variation

Downing, T (Wellcome Trust Sanger Institute) Wednesday 22 June 2011, 10:00-10:20

24 Jun 2011

21 MINS

21:10

24 Jun 2011


#107

New methods of identifying fast-evolving sites in aligned sequence data

Jermiin, L (CSIRO Ecosystem Sciences (CES)) Tuesday 21 June 2011, 16:50-17:10

24 Jun 2011

24 MINS

24:42

24 Jun 2011


#106

Principal components analysis in tree space

Nye, T (Newcastle) Tuesday 21 June 2011, 16:30-16:50

24 Jun 2011

19 MINS

19:26

24 Jun 2011


#105

Modeling the Evolutionary Dynamics of CRISPR spacers

Kupczok, A (IST Austria) Tuesday 21 June 2011, 16:10-16:30

24 Jun 2011

19 MINS

19:41

24 Jun 2011


#104

Corrections to a class of methods for inferring species trees from gene trees

Jewett, E (Michigan) Tuesday 21 June 2011, 15:50-16:10

24 Jun 2011

15 MINS

15:56

24 Jun 2011


#103

Phylogenies from DArTs: A stochastic Dollo proces with censored data

Holland, BR (Massey) Tuesday 21 June 2011, 14:00-15:00

23 Jun 2011

54 MINS

54:29

23 Jun 2011


#102

Phylogenetic trees and k-dissimilarity maps

Herrmann, S (East Anglia) Tuesday 21 June 2011, 15:30-15:50

23 Jun 2011

20 MINS

20:58

23 Jun 2011


#101

Reconstructing the parameters of a network from its tree-average distances

Willson, S (Iowa State) Tuesday 21 June 2011, 12:10-12:30

23 Jun 2011

22 MINS

22:34

23 Jun 2011