In this episode,
<a href="https://www.unil.ch/dee/en/home/menuguid/people/previous-collaborators/dr-david-dylus.html">David Dylus</a> talks about
<a href="https://github.com/DessimozLab/read2tree">Read2Tree</a>,
a tool that builds alignment matrices and phylogenetic trees from raw
sequencing reads.
By leveraging the database of orthologous genes called <a href="https://omabrowser.org/oma/home/">OMA</a>, Read2Tree bypasses traditional, time-consuming steps such as genome assembly, annotation and all-versus-all sequence comparisons.

 

 
 Links:

<ul>
 <li><a href="https://www.nature.com/articles/s41587-023-01753-4">Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree</a>
(David Dylus, Adrian Altenhoff, Sina Majidian, Fritz J. Sedlazeck, Christophe Dessimoz)</li>
 <li><a href="https://ecoevocommunity.nature.com/posts/read2tree-infers-phylogenetic-trees-from-raw-sequencing-reads-quick-and-easy">Background story</a></li>
 <li><a href="https://github.com/DessimozLab/read2tree">Read2Tree on GitHub</a></li>
 <li><a href="https://omabrowser.org/oma/home/">OMA browser</a></li>
 <li><a href="https://www.theguardian.com/news/audio/2023/jul/31/the-novelist-who-became-a-war-crimes-investigator-victoria-amelina-podcast">The Guardian’s podcast about Victoria Amelina and Volodymyr Vakulenko</a></li>
</ul>

 

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#68 Phylogenetic inference from raw reads and Read2Tree with David Dylus

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